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Transition to 1.2.11 - different .dbb sizes

Just wondering if anyone has experienced in their transition to 1.2.11 from
earlier versions (in my case 1.2.7) where the .dbb files generated from a ldif
file with the same configuration files is different in size (assuming that this
means different number of entries).

In particular, the dn.dbb is substantially smaller in size.

Also, the scripts used for the earlier version does not seem to be able located
some of the entries from this new format.